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Jirik, Miroslav and Moulisova, Vladimira and Schindler, Claudia and Cervenkova, Lenka and Palek, Richard and Rosendorf, Jachym and Arlt, Janine and Bolek, Lukas and Dejmek, Jiri and Dahmen, Uta and Jirikova, Kamila and Gruber, Ivan and Liska, Vaclav and Zelezny, Milos : MicrAnt: Towards Regression Task Oriented Annotation Tool for Microscopic Images . Combinatorial Image, Lecture Notes in Computer Science, p. 209-218, Springer International Publishing, Luki{\'{c}}, Tibor and Barneva, Reneta P. and Brimkov, Valentin E. and {\v{C}}omi{\'{c}}, Lidija and Sladoje, Nata{\v{s}}a, 2020.

Abstract

Annotating a dataset for training a Supervised Machine Learning algorithm is time and annotator’s attention intensive. Our goal was to create a tool that would enable us to create annotations of the dataset with minimal demands on expert’s time. Inspired by applications such as Tinder, we have created an annotation tool for describing microscopic images. A graphical user interface is used to select from a couple of images the one with the higher value of the examined parameter. Two experiments were performed. The first compares the speed of annotation of our application with the commonly used tool for processing microscopic images. In the second experiment, the texture description was compared with the annotations from MicrAnt application and commonly used application. The results showed that the processing time using our application is 3 times lower and the Spearman coefficient increases by 0.05 than using a commonly used application. In an experiment, we have shown that the annotations processed using our application increase the correlation of the studied parameter and texture descriptors compared with manual annotations.

Detail of publication

Title: MicrAnt: Towards Regression Task Oriented Annotation Tool for Microscopic Images
Author: Jirik, Miroslav ; Moulisova, Vladimira ; Schindler, Claudia ; Cervenkova, Lenka ; Palek, Richard ; Rosendorf, Jachym ; Arlt, Janine ; Bolek, Lukas ; Dejmek, Jiri ; Dahmen, Uta ; Jirikova, Kamila ; Gruber, Ivan ; Liska, Vaclav ; Zelezny, Milos
Language: English
Date of publication: 8 Jul 2020
Year: 2020
Type of publication: Papers in proceedings of reviewed conferences
Title of journal or book: Combinatorial Image
Series: Lecture Notes in Computer Science
Page: 209 - 218
DOI: 10.1007/978-3-030-51002-2_15
ISSN: 978-3-030-51002-2
Editor: Luki{\'{c}}, Tibor and Barneva, Reneta P. and Brimkov, Valentin E. and {\v{C}}omi{\'{c}}, Lidija and Sladoje, Nata{\v{s}}a
Publisher: Springer International Publishing
/ 2021-01-12 17:03:24 /

Keywords

Microscopy, Annotation, Scaffold, Liver, Decellularization

BibTeX

@INPROCEEDINGS{JirikMiroslav_2020_MicrAntTowards,
 author = {Jirik, Miroslav and Moulisova, Vladimira and Schindler, Claudia and Cervenkova, Lenka and Palek, Richard and Rosendorf, Jachym and Arlt, Janine and Bolek, Lukas and Dejmek, Jiri and Dahmen, Uta and Jirikova, Kamila and Gruber, Ivan and Liska, Vaclav and Zelezny, Milos},
 title = {MicrAnt: Towards Regression Task Oriented Annotation Tool for Microscopic Images},
 year = {2020},
 publisher = {Springer International Publishing},
 journal = {Combinatorial Image},
 pages = {209-218},
 editor = {Luki{\'{c}}, Tibor and Barneva, Reneta P. and Brimkov, Valentin E. and {\v{C}}omi{\'{c}}, Lidija and Sladoje, Nata{\v{s}}a},
 series = {Lecture Notes in Computer Science},
 ISSN = {978-3-030-51002-2},
 doi = {10.1007/978-3-030-51002-2_15},
 url = {http://www.kky.zcu.cz/en/publications/JirikMiroslav_2020_MicrAntTowards},
}